Rs# | Chr | Position, bp | Alleles | Protein change | SIFT | MAF in 151 ICP cases | MAF in 1029 controls | MAF in ExAC | MAF in gnomAD - Genomes | MAF in TOPMED | P value (cases-controls) | P value (cases-ExAC) | P value (cases- gnomAD - Genomes) | P value (cases-TOPMED) |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
rs1316267732 | 19 | 17,445,461 | G/C | Gly7Arg | 0.002 (D) | 0.0033 | 0 | NP | 0.00001 NP | 0.13 | — | 0.0043 | — | |
rs1 | 19 | 17,441,657 | G/A | Glu325Lys | 0.041 (D) | 0.0033 | 0 | NP | NP | NP | 0.13 | — | — | — |
rs2 | 19 | 17,440,988 | G/C | Val407Leu | 0.022 (D) | 0.0033 | 0 | NP | NP | NP | 0.13 | — | — | — |
rs3 | 19 | 17,439,584 | G/T | Ser538Ile | 0.039 (D) | 0.0033 | 0 | NP | NP 0.000030 | 0.13 | — | — | 0.0097 | |
rs760834212 | 19 | 17,435,864 | C/T | Ala998Val | 0.004 (D) | 0.0033 | 0 | 0.000058 | 0.000064 | 0.000008 | 0.13 | 0.01 | 0.01 | 0.0024 |
rs1391524054 | 19 | 17,435,780 | G/C | Ser1026Thr | 0.0 (D) | 0.0033 | 0 | NP | NP | 0.000008 | 0.13 | — | — | 0.0024 |
rs4 | 19 | 17,434,670 | G/T | Ala1119Ser | 0.008 (D) | 0.0033 | 0 | NP | 0.00004 | 0.000072 | 0.13 | — | 0.01 | 0.012 |
rs5 | 19 | 17,434,537 | C/T | Ala1163Val | 0.005 (D) | 0.0033 | 0 | NP | NP | NP | 0.13 | — | — | — |