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Table 1 Identification and localization of genotyped SNPs and set of primers designed for sequencing

From: Ancestry informative markers and selected single nucleotide polymorphisms in immunoregulatory genes on preterm labor and preterm premature rupture of membranes: a case control study

Gene

Location

Variable sites (a)

SNP locationb

Primers

IL1B

2q14

rs1143627 (−31 T > C)

112836810

IL1b31 F 5’-CCCCTAAGAAGCTTCCACCA- 3’

IL1b31 R 5’-AAGAGAATCCCAGAGCAGCC- 3’

rs16944 (−511 C > T)

112837290

IL1b511 F 5’-TGAGGGTGTGGGTCTCTACC- 3’

IL1b511 R 5’-TGGCTAGGGTAACAGCACCT- 3’

IL6

7p21

rs1800795 (−174 G > C)

22727026

IL6 F 5’-TGCACTTTTCCCCCTAGTTG- 3’

IL6 R 5’-GCCTCAGACATCTCCAGTCC- 3’

IL6R

1q21.3

rs2228144

154429203

IL6R1 F 5’-GAGAATGCTGCCCTAATCCA- 3’

IL6R1 R 5’-GCATTGTCTTCCGGCTCTAC- 3’

rs2228145 (D358A A > C)

154454494

IL6R2 F 5’-GAGGGGAAGGTTCCTTTGAG- 3’

IL6R2 R 5’-GAACACCACAGGGCCATC- 3’

TNFA

6p21.3

rs361525 (−238 G > A)

31575324

TNF238 F 5’-AATCAGTCAGTGGCCCAGAA- 3’

TNF238 R 5’-ATCTGGAGGAAGCGGTAGTG- 3’

rs1800629 (−308 G > A)

31575254

TNF308 F 5’-GAAGCCCCTCCCAGTTCTAG- 3’

TNF308 R 5’-TCTGGGCCACTGACTGATTT- 3’

TNFRII

1p36.3

rs653667 (−24660)

12191751

TNFR 5’-F 5’-GAGTGCAGGCTTGAGTTTCC- 3’

TNFR 5’-R 5’-GTGTTGTGTGTGCCCCATG- 3’

IL10

1q31-32

rs1800872 (−592 C > A)

206773062

IL10-592 F 5’-TGGAAACATGTGCCTGAGAA- 3’

IL10-592R 5’-GAGGGGGTGGGCTAAATATC- 3’

rs1800871 (−819 G > A)

206773289

IL10-819 F 5’-TGGTGTACAGTAGGGTGAGG- 3’

IL10-819 R 5’-GGGAAGTGGGTAAGAGTAGTC- 3’

rs1800896 (−1082 A > G)

206773552

IL10-1082 F 5’-CAACTGGCTCCCCTTACCTT- 3’

IL10-1082 R 5’-ATGGAGGCTGGATAGGAGGT- 3’

TLR2

4q32

rs4696480

153685974

TLR2 F 5’-CTTGGGTGCTGCTGTAACAA- 3’

TLR2 R 5’-TGTTATCACCAAGGGAGCAG- 3’

TLR4

9q32-33

rs4986790 (Asp299Gly)

117713024

TLR4-299 F 5’-CTCTAGAGGGCCTGTGCAAT- 3’

TLR4-299 R 5’-TCAATGTGGGAAACTGTCCA- 3’

rs4986791 (Thr399Ile)

117713324

TLR4-399 F 5’-CAACAAAGGTGGGAATGCTT- 3’

TLR4-399 R 5’-TCAAATTGGAATGCTGGAAA- 3’

TIMP1

Xp11.3

rs2070584

47587120

TIMP1 F 5’-CAACAGCAGCAATGGTCACT- 3’

TIMP1 R 5’-CTGGCAAGATGTGTGAATGG- 3’

TIMP2

17q25

rs2277698

78870935

TIMP2 F 5’-TCCTCCTCCTTGTCTTTCCA- 3’

TIMP2 R 5’-TAGGAACAGCCCCACTTCTG- 3’

MMP9

20q11.2-13.1

rs3918242 (−1562C > T)

46007337

MMP9 F 5’-5’- GCCTGGCACATAGTAGGCCC-3’

MMP9 R 5’-5’- CTTCCTAGCCAGCCGGCATC-3’

  1. aAs commonly referred in the literature. bObtained from dbSNP (NCBI)