Gene | Location | Variable sites (a) | SNP locationb | Primers |
---|---|---|---|---|
IL1B | 2q14 | rs1143627 (−31 T > C) | 112836810 | IL1b31 F 5’-CCCCTAAGAAGCTTCCACCA- 3’ |
IL1b31 R 5’-AAGAGAATCCCAGAGCAGCC- 3’ | ||||
rs16944 (−511 C > T) | 112837290 | IL1b511 F 5’-TGAGGGTGTGGGTCTCTACC- 3’ | ||
IL1b511 R 5’-TGGCTAGGGTAACAGCACCT- 3’ | ||||
IL6 | 7p21 | rs1800795 (−174 G > C) | 22727026 | IL6 F 5’-TGCACTTTTCCCCCTAGTTG- 3’ |
IL6 R 5’-GCCTCAGACATCTCCAGTCC- 3’ | ||||
IL6R | 1q21.3 | rs2228144 | 154429203 | IL6R1 F 5’-GAGAATGCTGCCCTAATCCA- 3’ |
IL6R1 R 5’-GCATTGTCTTCCGGCTCTAC- 3’ | ||||
rs2228145 (D358A A > C) | 154454494 | IL6R2 F 5’-GAGGGGAAGGTTCCTTTGAG- 3’ | ||
IL6R2 R 5’-GAACACCACAGGGCCATC- 3’ | ||||
TNFA | 6p21.3 | rs361525 (−238 G > A) | 31575324 | TNF238 F 5’-AATCAGTCAGTGGCCCAGAA- 3’ |
TNF238 R 5’-ATCTGGAGGAAGCGGTAGTG- 3’ | ||||
rs1800629 (−308 G > A) | 31575254 | TNF308 F 5’-GAAGCCCCTCCCAGTTCTAG- 3’ | ||
TNF308 R 5’-TCTGGGCCACTGACTGATTT- 3’ | ||||
TNFRII | 1p36.3 | rs653667 (−24660) | 12191751 | TNFR 5’-F 5’-GAGTGCAGGCTTGAGTTTCC- 3’ |
TNFR 5’-R 5’-GTGTTGTGTGTGCCCCATG- 3’ | ||||
IL10 | 1q31-32 | rs1800872 (−592 C > A) | 206773062 | IL10-592 F 5’-TGGAAACATGTGCCTGAGAA- 3’ |
IL10-592R 5’-GAGGGGGTGGGCTAAATATC- 3’ | ||||
rs1800871 (−819 G > A) | 206773289 | IL10-819 F 5’-TGGTGTACAGTAGGGTGAGG- 3’ | ||
IL10-819 R 5’-GGGAAGTGGGTAAGAGTAGTC- 3’ | ||||
rs1800896 (−1082 A > G) | 206773552 | IL10-1082 F 5’-CAACTGGCTCCCCTTACCTT- 3’ | ||
IL10-1082 R 5’-ATGGAGGCTGGATAGGAGGT- 3’ | ||||
TLR2 | 4q32 | rs4696480 | 153685974 | TLR2 F 5’-CTTGGGTGCTGCTGTAACAA- 3’ |
TLR2 R 5’-TGTTATCACCAAGGGAGCAG- 3’ | ||||
TLR4 | 9q32-33 | rs4986790 (Asp299Gly) | 117713024 | TLR4-299 F 5’-CTCTAGAGGGCCTGTGCAAT- 3’ |
TLR4-299 R 5’-TCAATGTGGGAAACTGTCCA- 3’ | ||||
rs4986791 (Thr399Ile) | 117713324 | TLR4-399 F 5’-CAACAAAGGTGGGAATGCTT- 3’ | ||
TLR4-399 R 5’-TCAAATTGGAATGCTGGAAA- 3’ | ||||
TIMP1 | Xp11.3 | rs2070584 | 47587120 | TIMP1 F 5’-CAACAGCAGCAATGGTCACT- 3’ |
TIMP1 R 5’-CTGGCAAGATGTGTGAATGG- 3’ | ||||
TIMP2 | 17q25 | rs2277698 | 78870935 | TIMP2 F 5’-TCCTCCTCCTTGTCTTTCCA- 3’ |
TIMP2 R 5’-TAGGAACAGCCCCACTTCTG- 3’ | ||||
MMP9 | 20q11.2-13.1 | rs3918242 (−1562C > T) | 46007337 | MMP9 F 5’-5’- GCCTGGCACATAGTAGGCCC-3’ |
MMP9 R 5’-5’- CTTCCTAGCCAGCCGGCATC-3’ |