CNV regiona
|
Gene contents
|
Copy-number frequencyb
|
---|
Casesc
|
Controlsc
|
Population-based controlsd
|
---|
Chr13:83.004-83.045 Mb
|
Intergenic
|
5/169
|
0/114
|
6/770
|
Chr16:14.972-14.987 Mb
|
PDXDC1
|
8/169
|
1/114
|
14/770
|
Chr19:48.461-48.476 Mb
|
PSG11
|
5/169
|
1/114
|
2/770
|
-
aMinimum region of overlap across all subjects harboring the deletion.
-
bCNV frequencies are derived from SNP microarray data.
-
cAlgorithm detected CNVs were all validated by RT-qPCR with the exception of one case in each of the chromosome 13 and 16 regions due to unavailable DNA. Furthermore, RT-qPCR identified a heterozygous deletion in one case and two control subjects in the chromosome 16 CNV region as well as a case subject in the chromosome 19 region that were called as copy normal by the algorithms.
-
dWhite female subjects from a GWAS of schizophrenia genotyped using Affymetrix SNP 6.0 microarrays. CNVs were detected using the same algorithms as the PE GWAS. Four population-based controls did not pass sample QC.